Darrell Conklin

Ikerbasque Research Professor, UPV/EHU

Department of Computer Science and Artificial Intelligence at UPV/EHU.

Research line:

Bioinformatics, music informatics.

Previous research experience in centers in Spain, United Kingdom, USA, Norway, Greece, and Canada.

Doctor in Computer Science, Queen's University 1995.

2024

Article / Mining Significant Sequential Contrast Patterns

Lecture Notes in Computer Science

Conklin, D.

2023

Book / Pattern in Music

Routledge, Taylor and Francis. Special Issue as Book of Journal of Mathematics and Music 15(2)

Darrell Conklin

2021

Article / A computational exploration of melodic patterns in Arab-Andalusian music

Journal of Mathematics and Music

Nuttall, T.; Casado, M.G.; Ferraro, A.; Conklin, D.; Caro Repetto, R.

Article / Mining contour sequences for significant closed patterns

Journal of Mathematics and Music

Conklin, D.

Article / Modelling pattern interestingness in comparative music corpus analysis

Journal of Mathematics and Music

Neubarth, K.; Conklin, D.

Data Paper / Transcriptomic dataset for Sardina pilchardus: Assembly, annotation, and expression of nine tissues

Data in Brief

Langa, J.; Huret, M.; Montes, I.; Conklin, D.; Estonba, A.

Editorial / Pattern in music

Journal of Mathematics and Music

Conklin, D.

2020

Article / Aspects of pattern discovery for Mozarabic chant realization

The 2020 Joint Conference on AI Music Creativity

Conklin, D. and Maessen, G.

Article / Sequence generation using unwords

Machine Learning and Knowledge Discovery in Databases

D. Conklin

Article / Symbolic music classification based on multiple sequential patterns

Machine Learning and Knowledge Discovery in Databases

K. Neubarth and D. Conklin

Article / EXFI: Exon and splice graph prediction without a reference genome

Ecology and Evolution

Langa, J.; Estonba, A.; Conklin, D.

Article / Mining characteristic patterns for comparative music corpus analysis

Applied Sciences (Switzerland)

Neubarth, K.; Conklin, D.

2019

Book / Amplificate Oblationem, Generación computacional de melodías para el canto perdido del rito mozárabe (fase III: 2017-2019)

Geert Maessen and Darrell Conklin

Article / A novel transcriptome-derived SNPs array for tench (Tinca tinca L.)

PLOS ONE

Kumar, G., Langa, J., Montes, I., Conklin, D., Kocour, M., Kohlmann, K., and Estonba, A.

Article / Music corpus analysis using unwords

Mathematics and Computation in Music

D. Conklin

Article / Identification and description of outliers in the Densmore collection of Native American music

Applied Sciences

K. Neubarth and D. Conklin

Article / Generation of melodies for the lost chant of the Mozarabic rite

Applied Sciences (Switzerland)

Conklin, D.; Maessen, G.

Article / A novel transcriptome-derived SNPs array for tench (Tinca tinca L.)

PLoS ONE

Kumar, G.; Langa, J.; Montes, I.; Conklin, D.; Kocour, M.; Kohlmann, K.; Estonba, A.

Article / Identification and description of outliers in the Densmore collection of Native American music

Applied Sciences (Switzerland)

Neubarth, K.; Conklin, D.

2018

Article / Two methods to compute melodies for the lost chant of the Mozarabic rite

8th International Workshop on Folk Music Analysis FMA2018

Maessen, G. and Conklin, D.

Article / Generation of two-voice imitative counterpoint from statistical models

International Journal of Interactive Multimedia and Artificial Intelligence

Padilla, V. and Conklin, D.

Article / Melody transformation with semiotic patterns

Music Technology with Swing

Goienetxea, I. and Conklin, D.

Article / Creative chord sequence generation for electronic dance music

Applied Sciences (Switzerland)

Conklin, D.; Gasser, M.; Oertl, S.

Article / Supervised descriptive pattern discovery in Native American music

Journal of New Music Research

Neubarth, K.; Shanahan, D.; Conklin, D.

2017

Article / Discovery of statistically interesting global-feature patterns

MML 2017: 10th International Workshop on Machine Learning and Music

Neubarth, K. and Conklin, D.

Article / Modelling and sampling jazz chord sequences

MML 2017: 10th International Workshop on Machine Learning and Music

Conklin, D.

Article / L'ethnomusicologie computationnelle: Pour un renouveau de la discipline

Cahiers d'ethnomusicologie

Weisser, S., Lartillot, O., Demoucron, M., Conklin, D.

Article / Harmonic Structure Predicts the Enjoyment of Uplifting Trance Music

Frontiers in Psychology

Agres, K.; Herremans, D.; Bigo, L.; Conklin, D.

2016

Chapter / Computational Music Analysis

D.Meredith

D. Conklin and S. Weisser

Chapter / Computational Music Analysis

D.Meredith

K. Neubarth and D. Conklin.

Article / A Pattern Mining Approach to Study a Collection of Dutch Folk-Songs

FMA: 6th International Workshop on Folk Music Analysis

P. van Kranenburg and D. Conklin

Article / Melody classification with pattern covering

MML 2016: 9th International Workshop on Machine Learning and Music

I. Goienetxea, K. Neubarth, and D. Conklin

Article / Supervised descriptive folk music analysis integrating global and event features

MML 2016: 9th International Workshop on Machine Learning and Music

Neubarth, K. and Conklin, D.

Article / A transformational method for chorale generation

MML 2016: 9th International Workshop on Machine Learning and Music

Whorley, R. and Conklin, D.

Article / No loss of genetic diversity in the exploited and recently collapsed population of Bay of Biscay anchovy (Engraulis encrasicolus, L).

Marine Biology

Montes, I., Iriondo, M., Manzano, C., Santos, M., Conklin, D., Carvalho, G., Irigoien, X., and Estonba, A.

Article / Transcriptome analysis deciphers evolutionary mechanisms underlying genetic differentiation between coastal and offshore anchovy populations in the Bay of Biscay

Marine Biology

Montes, I., Zarraonaindia, I., Iriondo, M., Grant, W. S., Manzano, C., Cotano, U., Conklin, D., Irigoien, X., and Estonba, A.

Article / Transcriptome analysis deciphers evolutionary mechanisms underlying genetic differentiation between coastal and offshore anchovy populations in the Bay of Biscay

Marine Biology

Montes, I.; Zarraonaindia, I.; Iriondo, M.; Grant, W.S.; Manzano, C.; Cotano, U.; Conklin, D.; Irigoien, X.; Estonba, A.

Article / Chord sequence generation with semiotic patterns

Journal of Mathematics and Music

Conklin, D.

Article / No loss of genetic diversity in the exploited and recently collapsed population of Bay of Biscay anchovy (Engraulis encrasicolus, L.)

Marine Biology

Montes, I.; Iriondo, M.; Manzano, C.; Santos, M.; Conklin, D.; Carvalho, G.R.; Irigoien, X.; Estonba, A.

Article / Music Generation from Statistical Models of Harmony

Journal of New Music Research

Whorley, R.P.; Conklin, D.

Editorial / Machine learning and music generation

Journal of Mathematics and Music

Iñesta, J.M.; Conklin, D.; Ramírez, R.

2015

Article / Discovery and characterization of 80 SNPs and 1,624 SSRs in the transcriptome of Atlantic mackerel (Scomber scombrus, L)

Molecular Ecology Resources

Montes, I., Langa, J., Vilas, C., Helyar, S., Alvarez, P., Conklin, D., Estonba, A.

Article / Improved iterative random walk for four-part harmonisation

MCM 2015: International Conference on Mathematics and Computation in Music

Whorley, R. and Conklin, D.

Article / Transformation of a bertso melody with coherence

FMA: 5th International Workshop on Folk Music Analysis

Goienetxea, I. and Conklin, D.

Article / Contrast pattern mining of Ethiopian bagana songs

FMA: 5th International Workshop on Folk Music Analysis

Conklin, D. and Neubarth, K., and Weisser, S.

Article / Genomic Resources Notes Accepted 1 June 2015 - 31 July 2015

Molecular Ecology Resources

Álvarez, P.; Arthofer, W.; Coelho, M.M.; Conklin, D.; Estonba, A.; Grosso, A.R.; Helyar, S.J.; Langa, J.; Machado, M.P.; Montes, I.; Pinho, J.; Rief, A.; Schartl, M.; Schlick-Steiner, B.C.; Seeber, J.; Steiner, F.M.; Vilas, C.; GENOMIC RESOURCES DEVELOPMENT CONSORTIUM,

Article / Generating structured music for bagana using quality metrics based on Markov models

Expert Systems with Applications

Herremans, D.; Weisser, S.; Sörensen, K.; Conklin, D.

2014

Article / Antipattern discovery in Ethiopian bagana songs

Discovery Science

D. Conklin and S. Weisser

Article / New Directions in Music and Machine Learning

Journal of New Music Research

Conklin, D.; Ramirez, R.; Iñesta, J.M.

2013

Chapter / Tissue-Protective Cytokines

Ghezzi, P. and Cerami, A.

P. Ghezzi and D. Conklin

Article / Improved conversion rates for SNP genotyping of nonmodel organisms

International Work-Conference on Bioinformatics and Biomedical Engineering

D. Conklin, I. Montes, A. Albaina, A. Estonba

Article / Folk tune classification with multiple viewpoints

Third International Workshop on Folk Music Analysis FMA2013

D. Conklin

Article / Descriptive rule mining of Basque folk music

Third International Workshop on Folk Music Analysis FMA2013

K. Neubarth, C. Johnson, and D. Conklin

Article / Fusion functions for multiple viewpoints

MML 2013: International Workshop on Machine Learning and Music

D. Conklin

Article / Discovery of mediating association rules for folk music analysis

MML 2013: International Workshop on Machine Learning and Music

K. Neubarth, C. Johnson, and D. Conklin

Article / Antipattern Discovery in Folk Tunes

Journal of New Music Research

Conklin, D.

Article / SNP Discovery in European Anchovy (Engraulis encrasicolus, L) by High-Throughput Transcriptome and Genome Sequencing

PLoS ONE

Montes, I.; Conklin, D.; Albaina, A.; Creer, S.; Carvalho, G.R.; Santos, M.; Estonba, A.

Article / Multiple Viewpoint Systems for Music Classification

Journal of New Music Research

Conklin, D.

Article / Tissue-protective cytokines: Structure and evolution

Methods in Molecular Biology

Ghezzi, P.; Conklin, D.

2012

Chapter / Las Fronteras entre los Géneros: Flamenco y otras Músicas de Tradición Oral

José Miguel Días Báñez, Fransisco J. Escobar Borrego, Inmaculada Ventura Molina

Darrell Conklin

Article / Intron/exon boundary prediction for SNP discovery from transcriptome assemblies

XIth Spanish Symposium on Bioinformatics (JBI2012)

Darrell Conklin, Aitor Albaina, Iratxe Montes, Pablo Markaide, Iratxe Zarraonaindia, Andone Estonba

Article / String methods for folk music classification

ISMIR 2012:13th International Society for Music Information Retrieval Conference

R. Hillewaere, B. Manderick, and D. Conklin

Article / Antipattern Discovery in Basque Folk Tunes

Las Fronteras entre los Géneros: Flamenco y otras Músicas de Tradición Oral, II International Workshop on Folk Music Analysis - FMA

D. Conklin

Article / Data mining of Basque folk music

MML 2012: International Workshop on Machine Learning and Music

D. Conklin

Article / Drosophila Helical factor is an inducible protein acting as an immune-regulated cytokine in S2 cells

Cytokine

Malagoli, D.; Accorsi, A.; Sacchi, S.; Basile, V.; Mandrioli, M.; Pinti, M.; Conklin, D.; Ottaviani, E.

2011

Article / In vitro characterization of the cytokine Drosophila Helical factor

Invertebrate Survival Journal

Malagoli D , Accorsi A, Darrell Conklin, Filaferro M, Mandrioli M, Pinti M, Sacchi S, Ottaviani E

Article / Análisis computacional de cancioneros vascos

Euskonews

Darrell Conklin

Article / Comparative pattern analysis of cretan folk songs

Journal of New Music Research

Conklin, D.; Anagnostopoulou, C.

Editorial / Introduction to the special issue on music and machine learning

Journal of New Music Research

Conklin, D.; Ramirez, R.

2010

Article / Guest Editorial: Machine Learning and Music

Intelligent Data Analysis

Darrell Conklin, Christina Anagnostopoulou, Rafael Ramirez

Article / Discovery of distinctive patterns in music

Intelligent Data Analysis

Conklin, D.

Review / Distinctive patterns in the first movement of Brahms' string quartet in C minor

Journal of Mathematics and Music

Conklin, D.

2022

Co-Editor-in-Chief of the Journal of Mathematics and Music (ISSN 1745-9737)

2021

Associate Editor of the Journal of Mathematics and Music (ISSN 1745-9737)

2018

Editorial board member of the Journal of Mathematics and Music (ISSN 1745-9737)

Member, Profesorado, Programa de Doctorado "Sociedad Digital y Humanidades", de la Universidad Internacional de la Rioja (UNIR)

2015

Member, Profesorado UPV/EHU, Programa de Doctorado en Ingeniería Informática

2012

Editorial board member of the Journal of New Music Research (ISSN 0929-8215)

2024

Conference Paper | Mining Significant Sequential Contrast Patterns

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - Conference Paper

Conklin, D.

2020

Conference Paper | Sequence Generation Using Unwords

Communications in Computer and Information Science - Conference Paper

Conklin, D.

Conference Paper | Symbolic Music Classification Based on Multiple Sequential Patterns

Communications in Computer and Information Science - Conference Paper

Neubarth, K.; Conklin, D.

2019

Conference Paper | Music Corpus Analysis Using Unwords

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - Conference Paper

Conklin, D.

Conference Paper | Statistical generation of two-voice florid counterpoint

SMC 2016 - 13th Sound and Music Computing Conference, Proceedings - Conference Paper

Martín-Caro, V.P.; Conklin, D.

2018

Conference Paper | Melody Transformation with Semiotic Patterns

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - Conference Paper

Goienetxea, I.; Conklin, D.

2016

Conference Paper | Mining musical traits of social functions in native American music

Proceedings of the 17th International Society for Music Information Retrieval Conference, ISMIR 2016 - Conference Paper

Shanahan, D.; Neubarth, K.; Conklin, D.

Conference Paper | A viewpoint approach to symbolic music transformation

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - Conference Paper

Bigo, L.; Conklin, D.

Oral presentation | Melody generation with stratified probabilistic context-free grammars

DMRN+11: Digital Music Research Network One-day Workshop 2016 - Oral presentation

R. Groves and D. Conklin

Poster presentation | Assessment of Gene Contribution by Tissue in Teleost Species

NGS 2016: Genome Annotation - Poster presentation

J. Langa, D. Conklin, A. Estonba

Poster presentation | Relating musical features and social function: contrast pattern mining of native American music

International Conference on Music Perception and Cognition - Poster presentation

Shanahan, D., Neubarth, K., and Conklin, D.

Poster presentation | The Effect of Repetitive Structure on Enjoyment in Uplifting Trance Music

International Conference on Music Perception and Cognition - Poster presentation

Agres, K., Bigo, L., Herremans, D., and Conklin, D.

Poster presentation | Computational corpus analysis of native American music

DMRN+11: Digital Music Research Network One-day Workshop 2016 - Poster presentation

K. Neubarth, D. Shanahan, D. Conklin

2015

Conference Paper | Improved iterative random walk for four-part harmonization

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - Conference Paper

Whorley, R.; Conklin, D.

Oral presentation | Generating music with an optimization algorithm using a Markov based objective function

ORBEL 29: 29th annual conference of the Belgian Operational Research Society - Oral presentation

Herremans, D., Weisser, S., Sörensen, K., and Conklin, D.

Oral presentation | The Effect of Repetitive Structure on Enjoyment and Altered States in Uplifting Trance Music

2nd International Conference on Music and Consciousness - Oral presentation

Agres, K., Bigo, L., Herremans, D., and Conklin, D.

Poster presentation | Transformational methods for chorale generation

DMRN+10: Digital Music Research Network One-day Workshop - Poster presentation

Whorley, R. and Conklin, D.

2014

Conference Paper | Alignment methods for folk tune classification

Studies in Classification, Data Analysis, and Knowledge Organization - Conference Paper

Hillewaere, R.; Manderick, B.; Conklin, D.

Conference Paper | Sampling the extrema from statistical models of music with variable neighbourhood search

Proceedings - 40th International Computer Music Conference, ICMC 2014 and 11th Sound and Music Computing Conference, SMC 2014 - Music Technology Meets Philosophy: From Digital Echos to Virtual Ethos - Conference Paper

Herremans, D.; Sörensen, K.; Conklin, D.

Conference Paper | Antipattern discovery in ethiopian bagana songs

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - Conference Paper

Conklin, D.; Weisser, S.

Oral presentation | First species counterpoint generation with variable neighbourhood search and vertical viewpoints

ORBEL 28: 28th annual conference of the Belgian Operational Research Society - Oral presentation

Herremans, D., Sörensen, K. and Conklin, D.

Oral presentation | Generating structured music using quality metrics based on Markov models

DMRN+9: Digital Music Research Network One-day Workshop 2014 - Oral presentation

Herremans, D., Weisser, Sörensen, K., and Conklin, D.

Poster presentation | Music generation using harmonic transformations

DMRN+9: Digital Music Research Network One-day Workshop 2014 - Poster presentation

Bigo, L. and Conklin, D.

Poster presentation | Improved iterated random walk for four-part harmonisation

DMRN+9: Digital Music Research Network One-day Workshop 2014 - Poster presentation

Whorley, R. and Conklin, D.

Poster presentation | A genetic tool for traceability of European anchovy (Engraulis encrasicolus, L.) and albacore (Thunnus alalunga, Bonn.) fisheries derived food products

WEFTA 2014 SEAFOOD science for a changing demand - Poster presentation

Montes, I., Laconcha, U., Iriondo, M., Manzano, C., Conklin, D., Santos, M., Arrizabalaga, H., Irigoien, X., Estonba, A.

Poster presentation | A genetic traceability tool for the Atlantic mackerel (Scomber scombrus, L.) through NGS transcriptome-derived SNP discovery

WEFTA 2014 SEAFOOD science for a changing demand - Poster presentation

Montes, I., Langa, J., Conklin, D., Cotano, U., Alvarez, P., Estonba, A.

Poster presentation | Quantitative approach to measure the transcriptome SNP density for European anchovy (Engraulis encrasicolus, L) and Atlantic mackerel (Scomber scombrus, L)

Next Generation Sequencing Conference (NGS) 2014 - Poster presentation

Langa, J., Conklin, D., Montes, M., Estonba, A.

Poster presentation | SNP discovery by high-throughput sequencing in the Atlantic mackerel (Scomber scombrus, L) transcriptome

Next Generation Sequencing Conference (NGS) 2014 - Poster presentation

Montes, I., Conklin, D., Langa, J., Estonba, A.

2013

Oral presentation | Descubrimiento y validacion de SNPs en el transcriptoma de especies no modelo mediante secuenciacion masiva: el caso de la anchoa Europea (Engraulis encrasicolus, L)

XXXIX Congreso de la Sociedad Espanola de Genetica - Oral presentation

Montes, I., Conklin, D., Albaina, A., Santos, M., Estonba, A.

Oral presentation | First species counterpoint generation using vertical viewpoints

DMRN+8: Digital Music Research Network One-day Workshop 2013 - Oral presentation

Herremans, D., Sörensen, K. and Conklin, D.

2012

Conference Paper | String methods for folk tune genre classification

Proceedings of the 13th International Society for Music Information Retrieval Conference, ISMIR 2012 - Conference Paper

Hillewaere, R.; Manderick, B.; Conklin, D.

Conference Paper | Association mining of folk music genres and toponyms

Proceedings of the 13th International Society for Music Information Retrieval Conference, ISMIR 2012 - Conference Paper

Neubarth, K.; Goienetxea, I.; Johnson, C.G.; Conklin, D.

Oral presentation | Association Mining of Folk Music Content and Metadata

DMRN+7: Digital Music Research Network One-day Workshop - Oral presentation

Neubarth, K., Johnson, C., and Conklin, D.

2011

Conference Paper | Applying Subgroup Discovery for the Analysis of String Quartet Movements

Belgian/Netherlands Artificial Intelligence Conference - Conference Paper

Taminau, J.; Hillewaere, R.; Meganck, S.; Conklin, D.; Manderick, A.N.B.

Conference Paper | Associations between musicology and music information retrieval

Proceedings of the 12th International Society for Music Information Retrieval Conference, ISMIR 2011 - Conference Paper

Neubarth, K.; Bergeron, M.; Conklin, D.

Conference Paper | Subsumption of vertical viewpoint patterns

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - Conference Paper

Bergeron, M.; Conklin, D.

Oral presentation | On the computational analysis of Cretan folk music

First International Workshop on Folk Music Analysis - Oral presentation

Anagnostopoulou, C. and Conklin, D.

Poster presentation | Concurrent Estimation of Chords and Keys From Audio

MIREX 2011: Music Information Retrieval Exchange - Poster presentation

Rocher, T., Robine, M., Hanna, P., Conklin, D.

2010

Conference Paper | String quartet classification with monophonic models

Proceedings of the 11th International Society for Music Information Retrieval Conference, ISMIR 2010 - Conference Paper

Hillewaere, R.; Manderick, B.; Conklin, D.

Conference Paper | Discovery of contrapuntal patterns

Proceedings of the 11th International Society for Music Information Retrieval Conference, ISMIR 2010 - Conference Paper

Conklin, D.; Bergeron, M.

Conference Paper | Comparative pattern analysis of cretan folk songs

MML'10 - Proceedings of the 3rd ACM International Workshop on Machine Learning and Music, Co-located with ACM Multimedia 2010 - Conference Paper

Conklin, D.; Anagnostopoulou, C.

Conference Paper | Applying subgroup discovery for the analysis of string quartet movements

MML'10 - Proceedings of the 3rd ACM International Workshop on Machine Learning and Music, Co-located with ACM Multimedia 2010 - Conference Paper

Taminau, J.; Hillewaere, R.; Meganck, S.; Conklin, D.; Nowé, A.; Manderick, B.

Conference Paper | Chord sequence patterns in OWL

Proceedings of the 7th Sound and Music Computing Conference, SMC 2010 - Conference Paper

Wissmann, J.; Weyde, T.; Conklin, D.

Oral presentation | Research in Folk Music Analysis

Jornadas de la Sociedad(e) Ibérica de Tecnologia MUsical (SITEMU) - Oral presentation

Darrell Conklin

Poster presentation | Polyphonic global features for string quartet classification

DMRN+5: Digital Music Research Network One-day Workshop 2010 - Poster presentation

Hillewaere, R., Manderick, B., Conklin, D.