Lionel Dupuy

Ikerbasque Research Professor, NEIKER

Research line:

Biophysics of plant-environment interactions.

Wellcome Image award, Massalski research prize, Chair Joliot (ESPCI, Paris), Consolidator Fellow (European Research Council).

Previous research experience at University of Cambridge (UK), University of California Davis (USA) and James Hutton Institute (UK).

PhD in root-soil mechanics (2004) from University of Bordeaux.

2024

Article / Smart soils track the formation of pH gradients across the rhizosphere

Plant and Soil

Patko, D.; Yang, Q.; Liu, Y.; Falireas, P.; Briou, B.; Tawade, B.V.; George, T.S.; Daniell, T.J.; MacDonald, M.P.; Ladmiral, V.; Ameduri, B.; Dupuy, L.X.

Article / Spatial and temporal detection of root exudates with a paper-based microfluidic device

Soil Biology and Biochemistry

Patko, D.; Gunatilake, U.B.; Gonzalez-Gaya, B.; Dupuy, L.X.; Basabe-Desmonts, L.; Benito-Lopez, F.

Article / Mobility and growth in confined spaces are important mechanisms for the establishment of Bacillus subtilis in the rhizosphere

Microbiology (United Kingdom)

Engelhardt, I.C.; Holden, N.; Daniell, T.J.; Dupuy, L.X.

Review / Root architecture and rhizosphere-microbe interactions

Journal of Experimental Botany

Gifford, M.L.; Xu, G.; Dupuy, L.X.; Vissenberg, K.; Rebetzke, G.

2023

Article / Can root systems redistribute soil water to mitigate the effects of drought?

Field Crops Research

Mair, A.; Dupuy, L.; Ptashnyk, M.

Article / Particle-based model shows complex rearrangement of tissue mechanical properties are needed for roots to grow in hard soil

PLoS Computational Biology

Mimault, M.; Ptashnyk, M.; Dupuy, L.X.

Article / Assessment of the Use of Infrared Laser for Dynamic Laser Speckle (DLS) Technique

Agriculture (Switzerland)

Contado, E.W.N.; Pasqual, M.; Dória, J.; Gonzalez-Peña, R.J.; Dupuy, L.X.; Braga, R.A.

Article / In situ control of root-bacteria interactions using optical trapping in transparent soil

Journal of Experimental Botany

Ge, S.; Dong, X.; Liu, Y.; Wright, K.M.; Humphris, S.N.; Dupuy, L.X.; Macdonald, M.P.

Article / Analysis of the Effect of Tilling and Crop Type on Soil Structure Using 3D Laser Profilometry

Agriculture (Switzerland)

Barreto, B.B.; Rivera, F.P.; McKenzie, B.M.; Preedy, K.; Liu, Y.; Dupuy, L.X.; Ribeiro, E.; Braga, R.A.

2022

Article / In situ control of root–bacteria interactions using optical trapping in transparent soil

Journal of Experimental Botany

Sisi Ge, Xingshui Dong, Yangminghao Liu, Kathryn M Wright, Sonia N Humphris, Lionel X Dupuy, Michael P MacDonald

Article / Model for water infiltration in vegetated soil with preferential flow oriented by plant roots

Plant and Soil

Mair, A.; Dupuy, L.X.; Ptashnyk, M.

Article / Novel form of collective movement by soil bacteria

ISME Journal

Engelhardt, I.C.; Patko, D.; Liu, Y.; Mimault, M.; de las Heras Martinez, G.; George, T.S.; MacDonald, M.; Ptashnyk, M.; Sukhodub, T.; Stanley-Wall, N.R.; Holden, N.; Daniell, T.J.; Dupuy, L.X.

2021

Article / High-resolution 3D mapping of rhizosphere glycan patterning using molecular probes in a transparent soil system

The Cell Surface

Jones, C.Y.; Engelhardt, I.; Patko, D.; Dupuy, L.; Holden, N.; Willats, W.G.T.

Article / Plant–environment microscopy tracks interactions of Bacillus subtilis with plant roots across the entire rhizosphere

Proceedings of the National Academy of Sciences of the United States of America

Liu, Y.; Patko, D.; Engelhardt, I.; George, T.S.; Stanley-Wall, N.R.; Ladmiral, V.; Ameduri, B.; Daniell, T.J.; Holden, N.; MacDonald, M.P.; Dupuy, L.X.

Article / In situ laser manipulation of root tissues in transparent soil

Plant and Soil

Ge, S.; Dupuy, L.X.; MacDonald, M.P.

Letter / Loïc Pagès, founding scientist in root ecology and modelling

in silico Plants

Jean-François Barczi, Amira Beroueg, Gerhard Buck-Sorlin, Valentin Couvreur, Frédéric Danjon, Benjamin M. Delory, Claude Doussan, Tom De Swaef, Xavier Draye, Jean-Louis Drouet, Sarah Garre, Frédéric Gérard, Adrien Heymans, Philippe Hinsinger, Mathieu Javaux, Axelle Koch, Magdalena Landl, François Lecompte, Daniel Leitner, Guillaume Lobet, Jonathan Lynch, Pierre Martre, Céline Meredieu,Felicien Meunier, Alain Mollier, Bertrand Muller, Christophe Nguyen,Catherine Picon-Cochard, Johannes A. Postma, Christophe Pradal,Frédéric Rees, Céline Richard-Molard, Tiina Roose, Clément Saint Cast, Andrea Schnepf, Philippe Thaler, Jan Vanderborght, Lianhai Wu, Xiaoran Zhou,

2020

Article / Framework for Quantification of the Dynamics of Root Colonization by Pseudomonas fluorescens Isolate SBW25

Frontiers in Microbiology

Carroll, D.; Holden, N.; Gifford, M.L.; Dupuy, L.X.

Mechanisms of bacterial mobility in soil

UPV/EHU

Beatriz Meza Manzaneque - In preparation

The role of root exudation and bacterial activity on water transport in soil

UPV/EHU

Emma Gomez Peral - In preparation

Manipulation of Plant and Microbes In Situ Using Optical Techniques

University of Dundee (UK)

Sisi Ge - In preparation

Microbial colonisation of the Rhizoplane

University of Warwick (UK)

Daire Caroll - Finished

Approaches for live microscopy of the whole plant-environment

University of Dundee (UK)

Yangminghao Liu - Finished

Structure of granular media and their effect on root growth

Sorbonne University

Yao Jiaojiao - In preparation

Nutrient acquisition through root-microbe interactions

University of Dundee (UK) / Southwest University (China)

Xinshui Dong - Finished

Mathematical Modelling of water transport in the plant-soil continuum

Heriot Watt University (UK)

Andrew Maire - In preparation

2024

Chaire Joliot ESPCI (Paris)

Expert Evaluator for Canada Research Chairs (CRC) Program

2023

Editor for Journal of Experimental Botany

Panelist ERC interview (FECYT, Spain)

2021

Expert Evaluator for EU Future and Emerging Technologies (FET Open)

Expert Evaluator for BBSRC (Biotechnology and Biological Sciences Research Council, UK)

2020

Scientific Evaluation of Mendel University (Brno, Czech Republic)

2023

Oral presentation | Rhizosphere on a Chip: New Techniques for Studying the Impact of Plant Roots on Soil Biological and Chemical Activity

SEB CENTENARY CONFERENCE 2023 - Oral presentation

D. Patko, Y. Liu, I. Engelhardt, L. Basabe-Desmonts, F.Benito-Lopez, L. X. Dupuy

Oral presentation | Understanding the Root-microbe Interactions

MBFT Kongresszusok, 29th National Meeting, - Oral presentation

D. Patko, Y. Liu, I. Engelhardt, L. Basabe-Desmonts, F.Benito-Lopez, L. X. Dupuy

Poster presentation | Paper Fluidics for the Investigation of Root Exudates of Living Plants in Space and Time

27th International Conference on Miniaturized Systems for Chemistry and Life Sciences, Micro Total Analysis Systems, μ-TAS-2023 - Poster presentation

D. Patko, U. B. Gunatilake, L. X. Dupuy, L. Basabe-Desmonts, F. Benito-Lopez